IL_5IMR_058
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_058 not in the Motif Atlas
- Geometric match to IL_5J7L_251
- Geometric discrepancy: 0.3458
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5IMR|1|D|U|239
5IMR|1|D|G|240
5IMR|1|D|A|241
5IMR|1|D|G|242
5IMR|1|D|U|243
5IMR|1|D|A|244
5IMR|1|D|G|245
*
5IMR|1|D|C|253
5IMR|1|D|G|254
5IMR|1|D|A|255
5IMR|1|D|A|256
5IMR|1|D|A|257
5IMR|1|D|G|258
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain h
- 50S ribosomal protein L15
- Chain z
- 50S ribosomal protein L35
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