IL_5IMR_064

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAG*UGGAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_064 not in the Motif Atlas

Geometric match to IL_8VTW_020

Geometric discrepancy: 0.3465

The information below is about IL_8VTW_020

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5IMR|1|D|U|703
5IMR|1|D|G|704
5IMR|1|D|A|705
5IMR|1|D|A|706
5IMR|1|D|G|707
*
5IMR|1|D|U|724
5IMR|1|D|G|725
5IMR|1|D|G|726
5IMR|1|D|A|727
5IMR|1|D|G|728
5IMR|1|D|G|729

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2