IL_5IMR_070
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- 5IMR|1|D|A|866
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_070 not in the Motif Atlas
- Homologous match to IL_4WF9_033
- Geometric discrepancy: 0.2729
- The information below is about IL_4WF9_033
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
5IMR|1|D|G|864
5IMR|1|D|C|865
5IMR|1|D|A|866
5IMR|1|D|C|867
5IMR|1|D|U|868
*
5IMR|1|D|A|909
5IMR|1|D|A|910
5IMR|1|D|A|911
5IMR|1|D|C|912
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain i
- 50S ribosomal protein L16
Coloring options: