IL_5IMR_073

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5IMR|1|D|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_073 not in the Motif Atlas

Homologous match to IL_7RQB_036

Geometric discrepancy: 0.2152

The information below is about IL_7RQB_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5IMR|1|D|C|998
5IMR|1|D|U|999
5IMR|1|D|A|1000
5IMR|1|D|A|1001
5IMR|1|D|G|1002
*
5IMR|1|D|C|1153
5IMR|1|D|G|1154
5IMR|1|D|A|1155
5IMR|1|D|A|1156
5IMR|1|D|G|1157

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L20

Chain u

50S ribosomal protein L30