IL_5IMR_074

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

5IMR|1|D|C|1005

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_074 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2495

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5IMR|1|D|C|1004
5IMR|1|D|C|1005
5IMR|1|D|C|1006
5IMR|1|D|C|1007
5IMR|1|D|C|1008
5IMR|1|D|A|1009
5IMR|1|D|A|1010
5IMR|1|D|G|1011
*
5IMR|1|D|C|1150
5IMR|1|D|G|1151

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L13

Chain m

50S ribosomal protein L20