IL_5IMR_096

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5IMR|1|D|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_096 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.3184

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5IMR|1|D|C|1686
5IMR|1|D|G|1687
5IMR|1|D|U|1688
5IMR|1|D|A|1689
5IMR|1|D|A|1690
5IMR|1|D|C|1691
*
5IMR|1|D|G|1696
5IMR|1|D|G|1697
5IMR|1|D|A|1698
5IMR|1|D|G|1699
5IMR|1|D|A|1700
5IMR|1|D|A|1701
5IMR|1|D|G|1702

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2