IL_5IMR_104

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_104 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.4483

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5IMR|1|D|G|1856
5IMR|1|D|G|1857
5IMR|1|D|G|1858
5IMR|1|D|A|1859
5IMR|1|D|G|1860
*
5IMR|1|D|C|1882
5IMR|1|D|G|1883
5IMR|1|D|A|1884
5IMR|1|D|A|1885
5IMR|1|D|C|1886

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L1

Chain v

50S ribosomal protein L31