IL_5IMR_116
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CAG*CGGAG
- Length
- 8 nucleotides
- Bulged bases
- 5IMR|1|D|G|2319, 5IMR|1|D|A|2320
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_116 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.334
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5IMR|1|D|C|2297
5IMR|1|D|A|2298
5IMR|1|D|G|2299
*
5IMR|1|D|C|2317
5IMR|1|D|G|2318
5IMR|1|D|G|2319
5IMR|1|D|A|2320
5IMR|1|D|G|2321
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L5
- Chain k
- 50S ribosomal protein L18
- Chain s
- 50S ribosomal protein L27
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