IL_5IMR_133

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

5IMR|1|D|G|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_133 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.3482

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

5IMR|1|D|U|2847
5IMR|1|D|G|2848
5IMR|1|D|U|2849
5IMR|1|D|A|2850
5IMR|1|D|A|2851
5IMR|1|D|G|2852
*
5IMR|1|D|U|2865
5IMR|1|D|U|2866
5IMR|1|D|G|2867
5IMR|1|D|A|2868
5IMR|1|D|G|2869

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L17

Chain l

50S ribosomal protein L19