IL_5IMR_140

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACCCG*UGUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_140 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3961

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5IMR|1|A|A|185
5IMR|1|A|C|186
5IMR|1|A|C|186|||A
5IMR|1|A|C|186|||B
5IMR|1|A|G|186|||C
*
5IMR|1|A|U|191|||D
5IMR|1|A|G|191|||E
5IMR|1|A|U|191|||F
5IMR|1|A|G|191
5IMR|1|A|U|192

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein S20