IL_5IMR_148

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5IMR|1|A|A|1256, 5IMR|1|A|U|1257, 5IMR|1|A|A|1280, 5IMR|1|A|U|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_148 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.3544

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5IMR|1|A|G|1255
5IMR|1|A|A|1256
5IMR|1|A|U|1257
5IMR|1|A|G|1258
*
5IMR|1|A|C|1277
5IMR|1|A|U|1278
5IMR|1|A|A|1279
5IMR|1|A|A|1280
5IMR|1|A|U|1281
5IMR|1|A|C|1282

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain N

30S ribosomal protein S10

Chain R

30S ribosomal protein S14 type Z