IL_5IMR_163

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUC*GAAGU

Length

9 nucleotides

Bulged bases

5IMR|1|D|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_163 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3224

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5IMR|1|D|G|1197
5IMR|1|D|U|1198
5IMR|1|D|U|1199
5IMR|1|D|C|1200
*
5IMR|1|D|G|1245
5IMR|1|D|A|1246
5IMR|1|D|A|1247
5IMR|1|D|G|1248
5IMR|1|D|U|1249

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain h

50S ribosomal protein L15

Chain m

50S ribosomal protein L20