3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
UGAC*GG
Length
6 nucleotides
Bulged bases
5IMR|1|A|G|129|||A, 5IMR|1|A|A|130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IMR_179 not in the Motif Atlas
Homologous match to IL_6CZR_119
Geometric discrepancy: 0.4336
The information below is about IL_6CZR_119
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_33761.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

5IMR|1|A|U|129
5IMR|1|A|G|129|||A
5IMR|1|A|A|130
5IMR|1|A|C|131
*
5IMR|1|A|G|231
5IMR|1|A|G|232

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain T
30S ribosomal protein S16
Chain U
30S ribosomal protein S17
Chain X
30S ribosomal protein S20

Coloring options:


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