IL_5IMR_187

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCU*GGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_187 not in the Motif Atlas

Geometric match to IL_9AXU_077

Geometric discrepancy: 0.3839

The information below is about IL_9AXU_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5IMR|1|D|C|837
5IMR|1|D|C|838
5IMR|1|D|U|839
*
5IMR|1|D|G|939
5IMR|1|D|G|940
5IMR|1|D|A|941
5IMR|1|D|G|942

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L15

Chain u

50S ribosomal protein L30

Chain z

50S ribosomal protein L35