IL_5IMR_188

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

5IMR|1|D|G|859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_188 not in the Motif Atlas

Homologous match to IL_7A0S_111

Geometric discrepancy: 0.5115

The information below is about IL_7A0S_111

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5IMR|1|D|U|858
5IMR|1|D|G|859
5IMR|1|D|U|860
5IMR|1|D|A|861
5IMR|1|D|G|862
*
5IMR|1|D|C|915
5IMR|1|D|G|916
5IMR|1|D|A|917
5IMR|1|D|A|918
5IMR|1|D|G|919

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain i

50S ribosomal protein L16

Chain s

50S ribosomal protein L27