IL_5IMR_195

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

5IMR|1|D|A|1847, 5IMR|1|D|A|1848

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_195 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.3609

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5IMR|1|D|G|1846
5IMR|1|D|A|1847
5IMR|1|D|A|1848
5IMR|1|D|G|1849
*
5IMR|1|D|C|1893
5IMR|1|D|C|1894

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA