IL_5IQR_039

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5IQR|1|1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_039 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1301

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5IQR|1|1|U|1018
5IQR|1|1|U|1019
5IQR|1|1|A|1020
5IQR|1|1|A|1021
5IQR|1|1|G|1022
5IQR|1|1|U|1023
5IQR|1|1|G|1024
*
5IQR|1|1|C|1140
5IQR|1|1|U|1141
5IQR|1|1|A|1142
5IQR|1|1|A|1143
5IQR|1|1|A|1144

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36