IL_5IQR_044

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5IQR|1|1|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_044 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2253

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

5IQR|1|1|G|1059
5IQR|1|1|U|1060
5IQR|1|1|U|1061
5IQR|1|1|G|1062
*
5IQR|1|1|C|1076
5IQR|1|1|A|1077
5IQR|1|1|U|1078
5IQR|1|1|C|1079

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain 8

GTP pyrophosphokinase

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11