IL_5IQR_071

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_071 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2672

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5IQR|1|1|U|1720
5IQR|1|1|G|1721
5IQR|1|1|A|1722
5IQR|1|1|G|1723
5IQR|1|1|G|1724
5IQR|1|1|U|1725
*
5IQR|1|1|A|1735
5IQR|1|1|U|1736
5IQR|1|1|G|1737
5IQR|1|1|G|1738
5IQR|1|1|A|1739
5IQR|1|1|G|1740

Current chains

Chain 1

LSU rRNA

Nearby chains