IL_5IQR_087

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGAG*UUUGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_087 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.5348

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5IQR|1|1|U|2098
5IQR|1|1|U|2099
5IQR|1|1|G|2100
5IQR|1|1|A|2101
5IQR|1|1|G|2102
*
5IQR|1|1|U|2187
5IQR|1|1|U|2188
5IQR|1|1|U|2189
5IQR|1|1|G|2190
5IQR|1|1|A|2191

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain G

50S ribosomal protein L9