IL_5IQR_154

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5IQR|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IQR_154 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1019

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5IQR|1|2|U|684
5IQR|1|2|G|685
5IQR|1|2|U|686
5IQR|1|2|A|687
5IQR|1|2|G|688
*
5IQR|1|2|C|699
5IQR|1|2|G|700
5IQR|1|2|U|701
5IQR|1|2|A|702
5IQR|1|2|G|703
5IQR|1|2|A|704
5IQR|1|2|G|705
5IQR|1|2|A|706

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11