IL_5IT8_078

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5IT8|1|BA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_078 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0474

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5IT8|1|BA|G|147
5IT8|1|BA|G|148
5IT8|1|BA|A|149
5IT8|1|BA|U|150
5IT8|1|BA|A|151
5IT8|1|BA|A|152
5IT8|1|BA|C|153
*
5IT8|1|BA|G|168
5IT8|1|BA|C|169
5IT8|1|BA|U|170
5IT8|1|BA|A|171
5IT8|1|BA|A|172
5IT8|1|BA|U|173
5IT8|1|BA|A|174
5IT8|1|BA|C|175

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20