IL_5IT8_080

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

5IT8|1|BA|U|244, 5IT8|1|BA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_080 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0623

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5IT8|1|BA|G|242
5IT8|1|BA|A|243
5IT8|1|BA|U|244
5IT8|1|BA|U|245
5IT8|1|BA|A|246
5IT8|1|BA|G|247
*
5IT8|1|BA|C|277
5IT8|1|BA|G|278
5IT8|1|BA|A|279
5IT8|1|BA|C|280
5IT8|1|BA|G|281
5IT8|1|BA|A|282
5IT8|1|BA|U|283
5IT8|1|BA|C|284

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17