IL_5IT8_147

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5IT8|1|CA|G|801, 5IT8|1|CA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_147 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0888

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5IT8|1|CA|G|674
5IT8|1|CA|A|675
5IT8|1|CA|A|676
5IT8|1|CA|A|677
5IT8|1|CA|C|678
*
5IT8|1|CA|G|799
5IT8|1|CA|A|800
5IT8|1|CA|G|801
5IT8|1|CA|A|802
5IT8|1|CA|U|803
5IT8|1|CA|A|804
5IT8|1|CA|G|805
5IT8|1|CA|C|806

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15