IL_5IT8_248
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT8_248 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0375
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5IT8|1|CB|C|71
5IT8|1|CB|G|72
5IT8|1|CB|A|73
5IT8|1|CB|U|74
5IT8|1|CB|G|75
5IT8|1|CB|G|76
5IT8|1|CB|U|77
5IT8|1|CB|A|78
5IT8|1|CB|G|79
*
5IT8|1|CB|C|97
5IT8|1|CB|G|98
5IT8|1|CB|A|99
5IT8|1|CB|G|100
5IT8|1|CB|A|101
5IT8|1|CB|G|102
5IT8|1|CB|U|103
5IT8|1|CB|A|104
5IT8|1|CB|G|105
Current chains
- Chain CB
- 5S rRNA
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CN
- 50S ribosomal protein L16
- Chain CW
- 50S ribosomal protein L25
Coloring options: