IL_5IT8_267
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT8_267 not in the Motif Atlas
- Homologous match to IL_5J7L_263
- Geometric discrepancy: 0.0539
- The information below is about IL_5J7L_263
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
5IT8|1|DA|U|703
5IT8|1|DA|G|704
5IT8|1|DA|A|705
5IT8|1|DA|A|706
5IT8|1|DA|G|707
*
5IT8|1|DA|U|724
5IT8|1|DA|G|725
5IT8|1|DA|G|726
5IT8|1|DA|A|727
5IT8|1|DA|G|728
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DC
- 50S ribosomal protein L2
Coloring options: