IL_5IT8_293

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5IT8|1|DA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_293 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0457

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5IT8|1|DA|C|1208
5IT8|1|DA|U|1209
5IT8|1|DA|G|1210
5IT8|1|DA|C|1211
5IT8|1|DA|G|1212
5IT8|1|DA|A|1213
5IT8|1|DA|A|1214
5IT8|1|DA|G|1215
*
5IT8|1|DA|U|1234
5IT8|1|DA|G|1235
5IT8|1|DA|G|1236
5IT8|1|DA|A|1237
5IT8|1|DA|G|1238

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S ribosomal protein L20