IL_5IT8_304

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

5IT8|1|DA|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_304 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0538

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5IT8|1|DA|U|1468
5IT8|1|DA|A|1469
5IT8|1|DA|A|1470
5IT8|1|DA|G|1471
*
5IT8|1|DA|U|1520
5IT8|1|DA|G|1521
5IT8|1|DA|A|1522
5IT8|1|DA|U|1523
5IT8|1|DA|G|1524

Current chains

Chain DA

23S rRNA

Nearby chains