IL_5IT8_376

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5IT8|1|CA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_376 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1532

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5IT8|1|CA|C|1043
5IT8|1|CA|C|1044
5IT8|1|CA|C|1045
5IT8|1|CA|A|1046
5IT8|1|CA|G|1047
5IT8|1|CA|A|1048
5IT8|1|CA|C|1049
5IT8|1|CA|A|1050
5IT8|1|CA|G|1051
*
5IT8|1|CA|U|1108
5IT8|1|CA|C|1109
5IT8|1|CA|G|1110
5IT8|1|CA|A|1111
5IT8|1|CA|G|1112

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6