IL_5IT8_381

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_381 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0464

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5IT8|1|CA|U|1851
5IT8|1|CA|U|1852
5IT8|1|CA|A|1853
5IT8|1|CA|A|1854
5IT8|1|CA|U|1855
5IT8|1|CA|U|1856
5IT8|1|CA|G|1857
5IT8|1|CA|A|1858
5IT8|1|CA|U|1859
5IT8|1|CA|G|1860
*
5IT8|1|CA|U|1882
5IT8|1|CA|U|1883
5IT8|1|CA|G|1884
5IT8|1|CA|A|1885
5IT8|1|CA|U|1886
5IT8|1|CA|C|1887
5IT8|1|CA|G|1888
5IT8|1|CA|A|1889
5IT8|1|CA|A|1890
5IT8|1|CA|G|1891

Current chains

Chain CA

23S rRNA

Nearby chains