IL_5IT8_383

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCCUUG*UAAUGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_383 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.3611

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5IT8|1|CA|G|2102
5IT8|1|CA|C|2103
5IT8|1|CA|C|2104
5IT8|1|CA|U|2105
5IT8|1|CA|U|2106
5IT8|1|CA|G|2107
*
5IT8|1|CA|U|2182
5IT8|1|CA|A|2183
5IT8|1|CA|A|2184
5IT8|1|CA|U|2185
5IT8|1|CA|G|2186
5IT8|1|CA|U|2187

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CH

50S ribosomal protein L9