IL_5IT8_384

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5IT8|1|CA|U|2111, 5IT8|1|CA|A|2114, 5IT8|1|CA|G|2115, 5IT8|1|CA|U|2118, 5IT8|1|CA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_384 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4954

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5IT8|1|CA|G|2110
5IT8|1|CA|U|2111
5IT8|1|CA|G|2112
5IT8|1|CA|U|2113
5IT8|1|CA|A|2114
5IT8|1|CA|G|2115
5IT8|1|CA|G|2116
5IT8|1|CA|A|2117
5IT8|1|CA|U|2118
5IT8|1|CA|A|2119
5IT8|1|CA|G|2120
*
5IT8|1|CA|C|2178
5IT8|1|CA|C|2179

Current chains

Chain CA

23S rRNA

Nearby chains