IL_5IT9_010

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGUU*AA

Length

7 nucleotides

Bulged bases

5IT9|1|2|C|114, 5IT9|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_010 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.3449

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90176.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

5IT9|1|2|U|113
5IT9|1|2|C|114
5IT9|1|2|G|115
5IT9|1|2|U|116
5IT9|1|2|U|117
*
5IT9|1|2|A|298
5IT9|1|2|A|299

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17