IL_5IT9_028

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAU*AAUUG

Length

9 nucleotides

Bulged bases

5IT9|1|2|A|505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_028 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2607

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5IT9|1|2|C|478
5IT9|1|2|G|479
5IT9|1|2|A|480
5IT9|1|2|U|481
*
5IT9|1|2|A|504
5IT9|1|2|A|505
5IT9|1|2|U|506
5IT9|1|2|U|507
5IT9|1|2|G|508

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain e

Ribosomal protein eS30