IL_5IT9_034
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5IT9|1|2|A|578
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_034 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.28
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IT9|1|2|G|561
5IT9|1|2|U|562
5IT9|1|2|G|563
5IT9|1|2|C|564
5IT9|1|2|C|565
5IT9|1|2|A|566
5IT9|1|2|G|567
*
5IT9|1|2|C|574
5IT9|1|2|G|575
5IT9|1|2|G|576
5IT9|1|2|U|577
5IT9|1|2|A|578
5IT9|1|2|A|579
5IT9|1|2|U|580
5IT9|1|2|U|581
5IT9|1|2|C|582
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal protein uS3
- Chain X
- Ribosomal protein uS21
- Chain e
- Ribosomal protein eS30
- Chain i
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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