IL_5IT9_047

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

5IT9|1|2|G|875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_047 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1756

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5IT9|1|2|C|873
5IT9|1|2|G|874
5IT9|1|2|G|875
5IT9|1|2|G|876
5IT9|1|2|G|877
*
5IT9|1|2|C|949
5IT9|1|2|A|950
5IT9|1|2|A|951
5IT9|1|2|G|952

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain N

Ribosomal protein uS15

Chain a

Ribosomal protein eS26