IL_5IT9_057

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5IT9|1|2|C|1157, 5IT9|1|2|C|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_057 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.0991

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

5IT9|1|2|A|1156
5IT9|1|2|C|1157
5IT9|1|2|C|1158
5IT9|1|2|A|1159
*
5IT9|1|2|U|1615
5IT9|1|2|C|1616
5IT9|1|2|C|1617
5IT9|1|2|C|1618
5IT9|1|2|U|1619

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain c

Ribosomal protein eS28