IL_5IT9_065
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5IT9|1|2|C|1429, 5IT9|1|2|U|1430, 5IT9|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IT9_065 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1468
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5IT9|1|2|U|1275
5IT9|1|2|G|1276
5IT9|1|2|G|1277
*
5IT9|1|2|U|1428
5IT9|1|2|C|1429
5IT9|1|2|U|1430
5IT9|1|2|G|1431
5IT9|1|2|U|1432
5IT9|1|2|G|1433
5IT9|1|2|A|1434
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal protein uS3
- Chain K
- Ribosomal protein eS10
- Chain U
- Ribosomal protein uS10
- Chain d
- Ribosomal protein eS29
- Chain i
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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