IL_5J01_002

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CUAAC*GGACG

Length

10 nucleotides

Bulged bases

5J01|1|A|A|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_002 not in the Motif Atlas

Geometric match to IL_2R8S_006

Geometric discrepancy: 0.2569

The information below is about IL_2R8S_006

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

5J01|1|A|C|70
5J01|1|A|U|71
5J01|1|A|A|72
5J01|1|A|A|73
5J01|1|A|C|74
*
5J01|1|A|G|113
5J01|1|A|G|114
5J01|1|A|A|115
5J01|1|A|C|116
5J01|1|A|G|117

Current chains

Chain A

group II intron lariat

Nearby chains