IL_5J01_010

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CAUAGUAC*GGAAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_010 not in the Motif Atlas

Geometric match to IL_3IGI_011

Geometric discrepancy: 0.1129

The information below is about IL_3IGI_011

Detailed Annotation

8x6 Sarcin-Ricin with inserted A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_61286.1

Basepair signature

cWW-L-R-L-R-L-tWH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5J01|1|A|C|296
5J01|1|A|A|297
5J01|1|A|U|298
5J01|1|A|A|299
5J01|1|A|G|300
5J01|1|A|U|301
5J01|1|A|A|302
5J01|1|A|C|303
*
5J01|1|A|G|316
5J01|1|A|G|317
5J01|1|A|A|318
5J01|1|A|A|319
5J01|1|A|G|320
5J01|1|A|G|321

Current chains

Chain A

group II intron lariat

Nearby chains