IL_5J01_011

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_011 not in the Motif Atlas

Geometric match to IL_1U6B_010

Geometric discrepancy: 0.1136

The information below is about IL_1U6B_010

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

5J01|1|A|U|332
5J01|1|A|A|333
5J01|1|A|U|334
*
5J01|1|A|A|349
5J01|1|A|G|350

Current chains

Chain A

group II intron lariat

Nearby chains