IL_5J01_012

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UG*CUAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J01_012 not in the Motif Atlas

Geometric match to IL_5DCV_006

Geometric discrepancy: 0.1101

The information below is about IL_5DCV_006

Detailed Annotation

Major groove platform with intercalated tWH

Broad Annotation

No text annotation

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

5J01|1|A|U|334
5J01|1|A|G|335
*
5J01|1|A|C|346
5J01|1|A|U|347
5J01|1|A|A|348
5J01|1|A|A|349

Current chains

Chain A

group II intron lariat

Nearby chains