IL_5J30_109
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAUG*CAGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J30_109 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3698
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5J30|1|RA|G|1319
5J30|1|RA|C|1320
5J30|1|RA|A|1321
5J30|1|RA|A|1322
5J30|1|RA|U|1323
5J30|1|RA|G|1324
*
5J30|1|RA|C|1330
5J30|1|RA|A|1331
5J30|1|RA|G|1332
5J30|1|RA|C|1333
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RW
- 50S ribosomal protein L22
- Chain RX
- 50S ribosomal protein L23
Coloring options: