IL_5J30_181

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

5J30|1|XA|U|244, 5J30|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_181 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0658

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

5J30|1|XA|C|242
5J30|1|XA|A|243
5J30|1|XA|U|244
5J30|1|XA|C|245
5J30|1|XA|A|246
5J30|1|XA|G|247
*
5J30|1|XA|C|277
5J30|1|XA|G|278
5J30|1|XA|A|279
5J30|1|XA|C|280
5J30|1|XA|G|281
5J30|1|XA|A|282
5J30|1|XA|C|283
5J30|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17