IL_5J3C_011

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

5J3C|1|QA|U|244, 5J3C|1|QA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0719

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5J3C|1|QA|C|242
5J3C|1|QA|A|243
5J3C|1|QA|U|244
5J3C|1|QA|C|245
5J3C|1|QA|A|246
5J3C|1|QA|G|247
*
5J3C|1|QA|C|277
5J3C|1|QA|G|278
5J3C|1|QA|A|279
5J3C|1|QA|C|280
5J3C|1|QA|G|281
5J3C|1|QA|A|282
5J3C|1|QA|C|283
5J3C|1|QA|G|284

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17