IL_5J3C_094

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5J3C|1|RA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_094 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0843

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

5J3C|1|RA|C|994
5J3C|1|RA|C|995
5J3C|1|RA|A|996
*
5J3C|1|RA|U|1159
5J3C|1|RA|G|1160

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30

Chain RN

50S ribosomal protein L13

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21