IL_5J3C_109

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_109 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3761

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5J3C|1|RA|G|1319
5J3C|1|RA|C|1320
5J3C|1|RA|A|1321
5J3C|1|RA|A|1322
5J3C|1|RA|U|1323
5J3C|1|RA|G|1324
*
5J3C|1|RA|C|1330
5J3C|1|RA|A|1331
5J3C|1|RA|G|1332
5J3C|1|RA|C|1333

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22

Chain RX

50S ribosomal protein L23