IL_5J3C_358

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CGGG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_358 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2881

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5J3C|1|XA|C|67
5J3C|1|XA|G|68
5J3C|1|XA|G|69
5J3C|1|XA|G|70
*
5J3C|1|XA|U|99
5J3C|1|XA|C|100
5J3C|1|XA|A|101
5J3C|1|XA|G|102

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20