IL_5J4B_359

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

5J4B|1|1A|U|2154, 5J4B|1|1A|A|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_359 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4339

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5J4B|1|1A|C|2151
5J4B|1|1A|U|2152
5J4B|1|1A|G|2153
5J4B|1|1A|U|2154
5J4B|1|1A|G|2155
5J4B|1|1A|A|2156
5J4B|1|1A|A|2157
5J4B|1|1A|C|2158
*
5J4B|1|1A|G|2177
5J4B|1|1A|G|2178
5J4B|1|1A|G|2179
5J4B|1|1A|A|2180
5J4B|1|1A|G|2181

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains