IL_5J4D_022

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5J4D|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_022 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0512

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5J4D|1|A|C|569
5J4D|1|A|G|570
5J4D|1|A|U|571
5J4D|1|A|A|572
5J4D|1|A|A|573
5J4D|1|A|A|574
5J4D|1|A|G|575
*
5J4D|1|A|C|880
5J4D|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain NA

30S ribosomal protein S5

Chain UA

30S ribosomal protein S12

Chain ZA

30S ribosomal protein S17